Package: argoFloats 1.0.8

Dan Kelley

argoFloats: Analysis of Oceanographic Argo Floats

Supports the analysis of oceanographic data recorded by Argo autonomous drifting profiling floats. Functions are provided to (a) download and cache data files, (b) subset data in various ways, (c) handle quality-control flags and (d) plot the results according to oceanographic conventions. A shiny app is provided for easy exploration of datasets. The package is designed to work well with the 'oce' package, providing a wide range of processing capabilities that are particular to oceanographic analysis. See Kelley, Harbin, and Richards (2021) <doi:10.3389/fmars.2021.635922> for more on the scientific context and applications.

Authors:Dan Kelley [aut, cre, cph], Jaimie Harbin [aut], Dewey Dunnington [ctb], Clark Richards [ctb]

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argoFloats.pdf |argoFloats.html✨
argoFloats/json (API)

# Install 'argoFloats' in R:
install.packages('argoFloats', repos = c('https://argocanada.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/argocanada/argofloats/issues

Datasets:
  • index - A Sample Index of Profiles
  • indexBgc - A Sample Index of Biogeochemical-Argo Profiles
  • indexDeep - A Sample Index of Deep Argo
  • indexSynthetic - A Sample Index of Synthetic Profiles

On CRAN:

7.30 score 17 stars 197 scripts 366 downloads 29 exports 3 dependencies

Last updated 7 months agofrom:c70f8d7e9d. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 12 2024
R-4.5-winOKNov 12 2024
R-4.5-linuxOKNov 12 2024
R-4.4-winOKNov 12 2024
R-4.4-macOKNov 12 2024
R-4.3-winOKNov 12 2024
R-4.3-macOKNov 12 2024

Exports:applyQCargoDefaultBathymetryargoDefaultDestdirargoDefaultIndexAgeargoDefaultProfileAgeargoDefaultServerargoFloatsClearCacheargoFloatsDebugargoFloatsGetFromCacheargoFloatsIsCachedargoFloatsListCacheargoFloatsStoreInCacheargoFloatsWhenCacheddownloadWithRetriesgetIndexgetProfileFromUrlgetProfileshasArgoTestCachehexToBitsmapAppmergeplotplotArgoTSreadProfilesshowshowQCTestssubsetsummaryuseAdjusted

Dependencies:gswoceRcpp

Handling Quality Control Flags and Adjusted Data

Jaimie Harbin (https://orcid.org/0000-0003-3774-3732), Dan Kelley (https://orcid.org/0000-0001-7808-5911) and Clark Richards (https://orcid.org/0000-0002-7833-206X)

Rendered fromqc.Rmdusingknitr::rmarkdownon Nov 12 2024.

Last update: 2022-08-04
Started: 2020-06-30

Introduction to argoFloats

Dan Kelley (https://orcid.org/0000-0001-7808-5911), Jaimie Harbin (https://orcid.org/0000-0003-3774-3732) and Clark Richards (https://orcid.org/0000-0002-7833-206X)

Rendered fromargoFloats.Rmdusingknitr::rmarkdownon Nov 12 2024.

Last update: 2023-03-06
Started: 2020-04-18

Readme and manuals

Help Manual

Help pageTopics
Look up a Value Within an argoFloats Object[[,argoFloats-method
Apply Quality Control FlagsapplyQC
Get Default ValuesargoDefaultBathymetry argoDefaultDestdir argoDefaultIndexAge argoDefaultProfileAge argoDefaultServer hasArgoTestCache
Base Class for argoFloats ObjectsargoFloats-class
Clear the CacheargoFloatsClearCache
Print Debugging InformationargoFloatsDebug
Get an Item From The CacheargoFloatsGetFromCache
Check Whether an Item is CachedargoFloatsIsCached
List Items in the CacheargoFloatsListCache
Store an Item in the CacheargoFloatsStoreInCache
Check When an Item was CachedargoFloatsWhenCached
Sample Argo File (Delayed Core Data)D4900785_048.nc
Download and Cache a DatasetdownloadWithRetries
Get an Index of Available Argo Float ProfilesgetIndex
Get Data for an Argo Float ProfilegetProfileFromUrl
Get "cycles"/"trajectory" Files Named in an argoFloats IndexgetProfiles
Convert Hexadecimal Digit to Integer VectorhexToBits
A Sample Index of Profilesindex
A Sample Index of Biogeochemical-Argo ProfilesindexBgc
A Sample Index of Deep ArgoindexDeep
A Sample Index of Synthetic ProfilesindexSynthetic
Interactive App For Viewing Argo Float PositionsmapApp
Merge argoFloats Indicesmerge,argoFloats-method
Plot an argoFloats Objectplot,argoFloats-method
Plot a TS diagram for an argoFloats objectplotArgoTS
Sample Argo File (Real-Time Core Data)R3901602_163.nc
Read Argo Profiles From Local FilesreadProfiles
Sample Argo File (Delayed Synthetic Data)SD5903586_001.nc
Show Information About argoFloats Objectshow,argoFloats-method
Show Real-Time QC Test Results For an Argo ObjectshowQCTests
Sample Argo File (Real-Time Synthetic Data)SR2902204_131.nc
Subset an argoFloats Objectsubset,argoFloats-method
Summarize an argoFloats Objectsummary,argoFloats-method
Switch [[ and Plot to Focus on Adjusted Data, if AvailableuseAdjusted